operophtera_brumata_core_32_85

Example assembl-specific configuration settings
[DATABASE_CORE]
	NAME = operophtera_brumata_v1_core_32_85_1
[META]
	SPECIES.PRODUCTION_NAME = operophtera_brumata_v1
	SPECIES.SCIENTIFIC_NAME = Operophtera brumata
	SPECIES.COMMON_NAME = Winter moth
	SPECIES.DISPLAY_NAME = Operophtera brumata
	SPECIES.DIVISION = EnsemblMetazoa
	SPECIES.URL = Operophtera_brumata_v1
	SPECIES.TAXONOMY_ID = 104452
	SPECIES.ALIAS = [ operophtera_brumata operophtera_brumata_v1 operophtera%20brumata winter%20moth ]
	ASSEMBLY.NAME = v1
	ASSEMBLY.DATE = 2015-08-11
	ASSEMBLY.ACCESSION = GCA_001266575.1
	ASSEMBLY.DEFAULT = v1
	PROVIDER.NAME = Wageningen University
	PROVIDER.URL = http://www.bioinformatics.nl/wintermoth
	GENEBUILD.ID = 2
	GENEBUILD.START_DATE = 2016-08
	GENEBUILD.VERSION = 2
	GENEBUILD.METHOD = import
	SAMPLE.LOCATION_PARAM    = OBRU01_Sc00001:57580-69243
	SAMPLE.LOCATION_TEXT     = OBRU01_Sc00001:57580-69243
	SAMPLE.GENE_PARAM        = OBRU01_00004
	SAMPLE.GENE_TEXT         = OBRU01_00004
	SAMPLE.TRANSCRIPT_PARAM  = OBRU01_00004-RA
	SAMPLE.TRANSCRIPT_TEXT   = OBRU01_00004-RA
	SAMPLE.SEARCH_TEXT       = OBRU01_00015-RA
[FILES]
	SCAFFOLD = [ fa http://download.lepbase.org/v4/provider/Obru1.fsa.gz ]
	GFF = [ gff3 http://download.lepbase.org/v4/provider/Obru_genes.gff.gz ]
	PROTEIN = [ fa http://download.lepbase.org/v4/provider/ObruPep.fasta.gz ]
[GENE_STABLE_IDS]
	GFF = [ gene->Name /(.+)/ ]
[TRANSCRIPT_STABLE_IDS]
	GFF = [ SELF->Name /(.+)/ ]
[TRANSLATION_STABLE_IDS]
	GFF = [ SELF->Name /(.+)/ /-RA/-PA/ ]
[MODIFY]
	OVERWRITE_DB = 1
	TRUNCATE_SEQUENCE_TABLES = 1
	TRUNCATE_GENE_TABLES = 1