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setup.ini

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[DATABASE]

With the exception of the session/ensembl_accounts database, EasyMirror will attempt to find
each database listed in [DATA_SOURCE] at DB_HOST, if it cannot connect it will try
DB_FALLBACK_HOST, then DB_FALLBACK2_HOST so databases used in the final site can be hosted
in multiple locations.

DB_SESSION_HOST should match the mySQL Docker container name, other hosts can be set to any
accessible mysql hostname.

[DATABASE]
  DB_HOST = example-mysql
  DB_PORT = 3306
  DB_USER = anonymous
  DB_PASS =

  DB_SESSION_HOST = example-mysql
  DB_SESSION_PORT = 3306
  DB_SESSION_USER = ensrw
  DB_SESSION_PASS = sessionuserpassword

  DB_FALLBACK_HOST = mysql-eg-publicsql.ebi.ac.uk
  DB_FALLBACK_PORT = 4157
  DB_FALLBACK_USER = anonymous
  DB_FALLBACK_PASS =

  DB_FALLBACK2_HOST = ensembldb.ensembl.org
  DB_FALLBACK2_PORT = 3306
  DB_FALLBACK2_USER = anonymous
  DB_FALLBACK2_PASS =

[REPOSITORIES]

A list of plugins to use, ENSEMBL_* (which fetches a number of repositories) and BIOPERL_*
are essential, the others are optional. Branches should match the release versions of the
databases (currently 85/32 for Ensembl/EnsemblGenomes).

To customise the site, create and add your own plugin repository, after BIOPERL, repositories higher
up the list will be loaded after those below so can overwrite specific settings.

[REPOSITORIES]
  ENSEMBL_URL = https://github.com/Ensembl
  ENSEMBL_BRANCH = release/85

  BIOPERL_URL = https://github.com/bioperl
  BIOPERL_BRANCH = master

  EG_METAZOA_PLUGIN_URL = https://github.com/EnsemblGenomes/eg-web-metazoa
  EG_METAZOA_PLUGIN_BRANCH = release/eg/32
  EG_METAZOA_PLUGIN_PACKAGE = EG::Metazoa

  API_PLUGIN_URL = https://github.com/EnsemblGenomes/ensemblgenomes-api
  API_PLUGIN_BRANCH = release/eg/32
  API_PLUGIN_PACKAGE = EG::API

  EG_COMMON_PLUGIN_URL = https://github.com/EnsemblGenomes/eg-web-common
  EG_COMMON_PLUGIN_BRANCH = release/eg/32
  EG_COMMON_PLUGIN_PACKAGE = EG::Common

  PUBLIC_PLUGINS = [ ]

[WEBSITE]

There should be no need to change these values

[WEBSITE]
  HTTP_PORT = 8080
  SERVER_ROOT = /ensembl

[DATA_SOURCE]

All databases listed here should be available on at least one of the database hosts listed under [DATABASE].

  • SPECIES_DBS a space separated list of core databases to include in the site. After importing
    new assemblies, add the database name to this list before reloading
  • SPECIES_DB_AUTO_EXPAND to also include variation, etc. databases for one or more core databases,
    list the types to attempt to load here
  • MULTI_DBS databases that are needed for an EnsemblGenomes site
  • COMPARA_DBS compara databases should be listed separately
[DATA_SOURCE]
  SPECIES_DBS = [
	melitaea_cinxia_core_32_85_1
	]
  SPECIES_DB_AUTO_EXPAND [ ]
  MULTI_DBS = [ ensemblgenomes_ontology_32_85 ensemblgenomes_info_32 ensembl_archive_85 ensembl_website_85 ]
  COMPARA_DBS = [ ensembl_compara_metazoa_32_85 ensembl_compara_pan_homology_32_85 ]

Updated less than a minute ago