{"_id":"57399707f6877e170078f0a8","parentDoc":null,"user":"573592b84b0ab120000b7d44","project":"5735936aafab441700723a50","version":{"_id":"5735936aafab441700723a53","__v":12,"project":"5735936aafab441700723a50","createdAt":"2016-05-13T08:42:18.615Z","releaseDate":"2016-05-13T08:42:18.615Z","categories":["5735936aafab441700723a54","5735a32931a73b1700887c94","5735b55beceb872200abbc6c","5735b56eb667601700d3bd6f","5735b9ba4b0ab120000b7dd4","5735b9c94b0ab120000b7dd5","5735cb131f16241700c8a0f7","5735e5c4e4824c3400aa1f21","5735e5d9e4824c3400aa1f23","5735e5f2ec67f6290013ac72","573ecfe0804f901700a9dfc7","573f276c7eeb8b190094ca7d"],"is_deprecated":false,"is_hidden":false,"is_beta":false,"is_stable":false,"codename":"","version_clean":"1.0.0","version":"1.0"},"category":{"_id":"5735e5d9e4824c3400aa1f23","__v":0,"version":"5735936aafab441700723a53","project":"5735936aafab441700723a50","sync":{"url":"","isSync":false},"reference":false,"createdAt":"2016-05-13T14:34:01.858Z","from_sync":false,"order":9,"slug":"configuration-options-core-import","title":"Configuration Options (Core Import)"},"__v":2,"updates":[],"next":{"pages":[],"description":""},"createdAt":"2016-05-16T09:46:47.983Z","link_external":false,"link_url":"","githubsync":"","sync_unique":"","hidden":false,"api":{"results":{"codes":[]},"settings":"","auth":"required","params":[],"url":""},"isReference":false,"order":14,"body":"```\n[SCAFFOLD_NAMES]\n  HEADER = 1\n  SCAFFOLD = [ /(.+)/ /scaf_/scaffold/ ]\n  CONTIG = [ /(.+)/ /ctg_/contig/ ]\n```\n- To use a file as a source of scaffold name synonyms for ``import_sequence_synonyms.pl``, [[FILES]](doc:files-core) ``SCAFFOLD_NAMES`` must be set and the ``HEADER`` flag may be used to indicate that the file has a header row that should be skipped during import.\n- Alternatively [Match and replace](doc:match-and-replace) regular expressions may be defined for ``SCAFFOLD`` and/or ``CONTIG`` names to automatically generate a file of synonyms during sequence import.","excerpt":"","slug":"scaffold_names-core","type":"basic","title":"[SCAFFOLD_NAMES]"}
``` [SCAFFOLD_NAMES] HEADER = 1 SCAFFOLD = [ /(.+)/ /scaf_/scaffold/ ] CONTIG = [ /(.+)/ /ctg_/contig/ ] ``` - To use a file as a source of scaffold name synonyms for ``import_sequence_synonyms.pl``, [[FILES]](doc:files-core) ``SCAFFOLD_NAMES`` must be set and the ``HEADER`` flag may be used to indicate that the file has a header row that should be skipped during import. - Alternatively [Match and replace](doc:match-and-replace) regular expressions may be defined for ``SCAFFOLD`` and/or ``CONTIG`` names to automatically generate a file of synonyms during sequence import.