{"_id":"5735b875afab441700723ae3","__v":5,"category":{"_id":"5735a32931a73b1700887c94","version":"5735936aafab441700723a53","__v":0,"project":"5735936aafab441700723a50","sync":{"url":"","isSync":false},"reference":false,"createdAt":"2016-05-13T09:49:29.176Z","from_sync":false,"order":2,"slug":"quick-start","title":"Stage 2 - Core Import"},"project":"5735936aafab441700723a50","version":{"_id":"5735936aafab441700723a53","__v":12,"project":"5735936aafab441700723a50","createdAt":"2016-05-13T08:42:18.615Z","releaseDate":"2016-05-13T08:42:18.615Z","categories":["5735936aafab441700723a54","5735a32931a73b1700887c94","5735b55beceb872200abbc6c","5735b56eb667601700d3bd6f","5735b9ba4b0ab120000b7dd4","5735b9c94b0ab120000b7dd5","5735cb131f16241700c8a0f7","5735e5c4e4824c3400aa1f21","5735e5d9e4824c3400aa1f23","5735e5f2ec67f6290013ac72","573ecfe0804f901700a9dfc7","573f276c7eeb8b190094ca7d"],"is_deprecated":false,"is_hidden":false,"is_beta":false,"is_stable":false,"codename":"","version_clean":"1.0.0","version":"1.0"},"parentDoc":null,"user":"573592b84b0ab120000b7d44","updates":[],"next":{"pages":[],"description":""},"createdAt":"2016-05-13T11:20:21.086Z","link_external":false,"link_url":"","githubsync":"","sync_unique":"","hidden":false,"api":{"results":{"codes":[]},"settings":"","auth":"required","params":[],"url":""},"isReference":false,"order":0,"body":"Beyond having run the steps in Stage 1, the only requirement for Stage 2 is a ``fasta`` format sequence file for the genome assembly you wish to import and a ``.gff3`` annotation file containing gene models (strictly speaking, it is possible to import only sequence data so the ``.gff3`` may be considered optional, though the resulting Ensembl database would have limited utility).","excerpt":"","slug":"stage-2-requirements","type":"basic","title":"Stage 2 requirements"}

Stage 2 requirements


Beyond having run the steps in Stage 1, the only requirement for Stage 2 is a ``fasta`` format sequence file for the genome assembly you wish to import and a ``.gff3`` annotation file containing gene models (strictly speaking, it is possible to import only sequence data so the ``.gff3`` may be considered optional, though the resulting Ensembl database would have limited utility).