{"__v":2,"_id":"574ef37c1866ba200010826d","category":{"project":"5735936aafab441700723a50","version":"5735936aafab441700723a53","_id":"5735e5f2ec67f6290013ac72","__v":0,"sync":{"url":"","isSync":false},"reference":false,"createdAt":"2016-05-13T14:34:26.031Z","from_sync":false,"order":10,"slug":"configuration-options-compara-import","title":"Configuration Options (Compara Import)"},"parentDoc":null,"project":"5735936aafab441700723a50","user":"573592b84b0ab120000b7d44","version":{"__v":12,"_id":"5735936aafab441700723a53","project":"5735936aafab441700723a50","createdAt":"2016-05-13T08:42:18.615Z","releaseDate":"2016-05-13T08:42:18.615Z","categories":["5735936aafab441700723a54","5735a32931a73b1700887c94","5735b55beceb872200abbc6c","5735b56eb667601700d3bd6f","5735b9ba4b0ab120000b7dd4","5735b9c94b0ab120000b7dd5","5735cb131f16241700c8a0f7","5735e5c4e4824c3400aa1f21","5735e5d9e4824c3400aa1f23","5735e5f2ec67f6290013ac72","573ecfe0804f901700a9dfc7","573f276c7eeb8b190094ca7d"],"is_deprecated":false,"is_hidden":false,"is_beta":false,"is_stable":false,"codename":"","version_clean":"1.0.0","version":"1.0"},"updates":[],"next":{"pages":[],"description":""},"createdAt":"2016-06-01T14:38:52.858Z","link_external":false,"link_url":"","githubsync":"","sync_unique":"","hidden":false,"api":{"results":{"codes":[]},"settings":"","auth":"required","params":[],"url":""},"isReference":false,"order":6,"body":"```\n[TAXA]\n\tBOMMOR = bombyx_mori_core_31_84_1\n\tDANPLE = danaus_plexippus_core_31_84_1\n\tHELMEL = heliconius_melpomene_core_31_84_1\n\tMELCIN = melitaea_cinxia_core_31_84_1\n\tBYCANY = bicyclus_anynana_nba01_core_31_84_1\n\tPLOINT = plodia_interpunctella_v1_core_31_84_1\n\tPIENAP = pieris_napi_das5_core_31_84_1\n\tPLUXYL = plutella_xylostella_dbmfjv1x1_core_31_84_1\n\tCHISUP = chilo_suppressalis_csuogs1_core_31_84_1\n\tPAPGLA = papilio_glaucus_v1x1_core_31_84_1\n\tLERACC = lerema_accius_v1x1_core_31_84_1\n\tPAPPOL = [ Papilio_polytes 76194 ]\n\tPAPXUT = [ Papilio_xuthus 66420 ]\n\tMANSEX = manduca_sexta_msex1_core_31_84_1\n```\nFor each taxon in the compara analysis, the ``[TAXA]`` stanza links the name used within the sequence/tree files to the associated core database.  \n\nTaxa that do not have a core database may be included in a compara analysis by providing a species name and [NCBI taxonomy](http://www.ncbi.nlm.nih.gov/taxonomy) ID, e.g. ``PAPPOL = [ Papilio_polytes 76194 ]``","excerpt":"","slug":"taxa-compara","type":"basic","title":"[TAXA]"}
``` [TAXA] BOMMOR = bombyx_mori_core_31_84_1 DANPLE = danaus_plexippus_core_31_84_1 HELMEL = heliconius_melpomene_core_31_84_1 MELCIN = melitaea_cinxia_core_31_84_1 BYCANY = bicyclus_anynana_nba01_core_31_84_1 PLOINT = plodia_interpunctella_v1_core_31_84_1 PIENAP = pieris_napi_das5_core_31_84_1 PLUXYL = plutella_xylostella_dbmfjv1x1_core_31_84_1 CHISUP = chilo_suppressalis_csuogs1_core_31_84_1 PAPGLA = papilio_glaucus_v1x1_core_31_84_1 LERACC = lerema_accius_v1x1_core_31_84_1 PAPPOL = [ Papilio_polytes 76194 ] PAPXUT = [ Papilio_xuthus 66420 ] MANSEX = manduca_sexta_msex1_core_31_84_1 ``` For each taxon in the compara analysis, the ``[TAXA]`` stanza links the name used within the sequence/tree files to the associated core database. Taxa that do not have a core database may be included in a compara analysis by providing a species name and [NCBI taxonomy](http://www.ncbi.nlm.nih.gov/taxonomy) ID, e.g. ``PAPPOL = [ Papilio_polytes 76194 ]``