default.ini

Default parameter values for EasyImport scripts.

[DATABASE_CORE]
    HOST = genomehubs-mysql
    PORT = 3306
    RW_USER =
    RW_PASS =
    RO_USER = anonymous
    RO_PASS =
[DATABASE_SEARCH]
    NAME = genomehubs_search_32_85
    HOST = genomehubs-mysql
    PORT = 3306
    RW_USER = importuser
    RW_PASS = importuserpassword
    RO_USER = anonymous
    RO_PASS =
[DATABASE_TAXONOMY]
    NAME = ncbi_taxonomy
    HOST = genomehubs-mysql
    PORT = 3306
    RO_USER = anonymous
    RO_PASS =
[DATABASE_TEMPLATE]
    NAME = melitaea_cinxia_core_32_85_1
    HOST = genomehubs-mysql
    PORT = 3306
    RO_USER = anonymous
    RO_PASS =
[GFF]
    SORT = 1
    CHUNK = [ change region ]
    _CONDITION_1 = [ MULTILINE CDS ]
    _CONDITION_2 = [ MULTILINE cDNA_match ]
    _CONDITION_3 = [ MULTILINE match ]
    _CONDITION_4 = [ MULTILINE three_prime_utr ]
    _CONDITION_5 = [ MULTILINE five_prime_utr ]
    _CONDITION_6 = [ LACKS_ID  CDS make ]
    _CONDITION_7 = [ EXPECTATION cds     hasSister exon force ]
    _CONDITION_8 = [ EXPECTATION cds     hasParent mrna force ]
    _CONDITION_9 = [ EXPECTATION exon    hasParent transcript|mrna|mirna|trna|ncrna|rrna force ]
    _CONDITION_10 = [ EXPECTATION mrna   hasParent gene force ]
    _CONDITION_11 = [ EXPECTATION ncrna hasParent gene force ]
    _CONDITION_12 = [ EXPECTATION trna   hasParent gene force ]
    _CONDITION_13 = [ EXPECTATION transcript       hasParent gene force ]
    _CONDITION_14 = [ EXPECTATION five_prime_utr hasParent mrna force ]
    _CONDITION_15 = [ EXPECTATION three_prime_utr hasParent mrna force ]
    _CONDITION_16 = [ EXPECTATION cds|exon|mrna|five_prime_utr|three_prime_utr|transcript|trna|ncrna|gene <=[_start,_end] SELF warn ]