default.ini

Default parameter values for EasyImport scripts.

[DATABASE_CORE]
	HOST = genomehubs-mysql
	PORT = 3306
	RW_USER =
	RW_PASS =
	RO_USER = anonymous
	RO_PASS =
[DATABASE_SEARCH]
	NAME = genomehubs_search_32_85
	HOST = genomehubs-mysql
	PORT = 3306
	RW_USER = importuser
	RW_PASS = importuserpassword
	RO_USER = anonymous
	RO_PASS =
[DATABASE_TAXONOMY]
	NAME = ncbi_taxonomy
	HOST = genomehubs-mysql
	PORT = 3306
	RO_USER = anonymous
	RO_PASS =
[DATABASE_TEMPLATE]
	NAME = melitaea_cinxia_core_32_85_1
	HOST = genomehubs-mysql
	PORT = 3306
	RO_USER = anonymous
	RO_PASS =
[GFF]
	SORT = 1
	CHUNK = [ change region ]
	_CONDITION_1 = [ MULTILINE CDS ]
	_CONDITION_2 = [ MULTILINE cDNA_match ]
	_CONDITION_3 = [ MULTILINE match ]
	_CONDITION_4 = [ MULTILINE three_prime_utr ]
	_CONDITION_5 = [ MULTILINE five_prime_utr ]
	_CONDITION_6 = [ LACKS_ID  CDS make ]
	_CONDITION_7 = [ EXPECTATION cds	 hasSister exon force ]
	_CONDITION_8 = [ EXPECTATION cds	 hasParent mrna force ]
	_CONDITION_9 = [ EXPECTATION exon	 hasParent transcript|mrna|mirna|trna|ncrna|rrna force ]
	_CONDITION_10 = [ EXPECTATION mrna	 hasParent gene force ]
	_CONDITION_11 = [ EXPECTATION ncrna hasParent gene force ]
	_CONDITION_12 = [ EXPECTATION trna	 hasParent gene force ]
	_CONDITION_13 = [ EXPECTATION transcript	   hasParent gene force ]
	_CONDITION_14 = [ EXPECTATION five_prime_utr hasParent mrna force ]
	_CONDITION_15 = [ EXPECTATION three_prime_utr hasParent mrna force ]
	_CONDITION_16 = [ EXPECTATION cds|exon|mrna|five_prime_utr|three_prime_utr|transcript|trna|ncrna|gene <=[_start,_end] SELF warn ]