{"metadata":{"image":[],"title":"","description":""},"api":{"url":"","auth":"required","settings":"","params":[],"results":{"codes":[]}},"next":{"description":"","pages":[]},"title":"[TAXA]","type":"basic","slug":"taxa-compara","excerpt":"","body":"```\n[TAXA]\n\tBOMMOR = bombyx_mori_core_31_84_1\n\tDANPLE = danaus_plexippus_core_31_84_1\n\tHELMEL = heliconius_melpomene_core_31_84_1\n\tMELCIN = melitaea_cinxia_core_31_84_1\n\tBYCANY = bicyclus_anynana_nba01_core_31_84_1\n\tPLOINT = plodia_interpunctella_v1_core_31_84_1\n\tPIENAP = pieris_napi_das5_core_31_84_1\n\tPLUXYL = plutella_xylostella_dbmfjv1x1_core_31_84_1\n\tCHISUP = chilo_suppressalis_csuogs1_core_31_84_1\n\tPAPGLA = papilio_glaucus_v1x1_core_31_84_1\n\tLERACC = lerema_accius_v1x1_core_31_84_1\n\tPAPPOL = [ Papilio_polytes 76194 ]\n\tPAPXUT = [ Papilio_xuthus 66420 ]\n\tMANSEX = manduca_sexta_msex1_core_31_84_1\n```\nFor each taxon in the compara analysis, the ``[TAXA]`` stanza links the name used within the sequence/tree files to the associated core database.  \n\nTaxa that do not have a core database may be included in a compara analysis by providing a species name and [NCBI taxonomy](http://www.ncbi.nlm.nih.gov/taxonomy) ID, e.g. ``PAPPOL = [ Papilio_polytes 76194 ]``","updates":[],"order":6,"isReference":false,"hidden":false,"sync_unique":"","link_url":"","link_external":false,"_id":"58c10f5b2c3c720f00768bd1","__v":0,"user":"573592b84b0ab120000b7d44","parentDoc":null,"githubsync":"","project":"5735936aafab441700723a50","version":{"version":"2.0","version_clean":"2.0.0","codename":"","is_stable":true,"is_beta":false,"is_hidden":false,"is_deprecated":false,"categories":["58c10f5a2c3c720f00768b88","58c10f5a2c3c720f00768b89","58c10f5a2c3c720f00768b8a","58c10f5a2c3c720f00768b8b","58c10f5a2c3c720f00768b8c","58c10f5a2c3c720f00768b8d","58c10f5a2c3c720f00768b8e","58c10f5a2c3c720f00768b8f","58c10f5a2c3c720f00768b90","58c10f5a2c3c720f00768b91","58c10f5a2c3c720f00768b92","58c10f5a2c3c720f00768b93","58c11574b36d8c0f006fda47","58c2cdcafc6eed3900e97640","58c2ce8afc6eed3900e97663"],"_id":"58c10f5a2c3c720f00768b87","project":"5735936aafab441700723a50","releaseDate":"2017-03-09T08:16:26.385Z","createdAt":"2017-03-09T08:16:26.385Z","__v":4},"category":{"sync":{"isSync":false,"url":""},"pages":[],"title":"Configuration Options (Compara Import)","slug":"configuration-options-compara-import","order":13,"from_sync":false,"reference":false,"_id":"58c10f5a2c3c720f00768b92","project":"5735936aafab441700723a50","__v":0,"version":"58c10f5a2c3c720f00768b87","createdAt":"2016-05-13T14:34:26.031Z"},"createdAt":"2016-06-01T14:38:52.858Z"}
``` [TAXA] BOMMOR = bombyx_mori_core_31_84_1 DANPLE = danaus_plexippus_core_31_84_1 HELMEL = heliconius_melpomene_core_31_84_1 MELCIN = melitaea_cinxia_core_31_84_1 BYCANY = bicyclus_anynana_nba01_core_31_84_1 PLOINT = plodia_interpunctella_v1_core_31_84_1 PIENAP = pieris_napi_das5_core_31_84_1 PLUXYL = plutella_xylostella_dbmfjv1x1_core_31_84_1 CHISUP = chilo_suppressalis_csuogs1_core_31_84_1 PAPGLA = papilio_glaucus_v1x1_core_31_84_1 LERACC = lerema_accius_v1x1_core_31_84_1 PAPPOL = [ Papilio_polytes 76194 ] PAPXUT = [ Papilio_xuthus 66420 ] MANSEX = manduca_sexta_msex1_core_31_84_1 ``` For each taxon in the compara analysis, the ``[TAXA]`` stanza links the name used within the sequence/tree files to the associated core database. Taxa that do not have a core database may be included in a compara analysis by providing a species name and [NCBI taxonomy](http://www.ncbi.nlm.nih.gov/taxonomy) ID, e.g. ``PAPPOL = [ Papilio_polytes 76194 ]``