[TAXA]

[TAXA]
    BOMMOR = bombyx_mori_core_31_84_1
    DANPLE = danaus_plexippus_core_31_84_1
    HELMEL = heliconius_melpomene_core_31_84_1
    MELCIN = melitaea_cinxia_core_31_84_1
    BYCANY = bicyclus_anynana_nba01_core_31_84_1
    PLOINT = plodia_interpunctella_v1_core_31_84_1
    PIENAP = pieris_napi_das5_core_31_84_1
    PLUXYL = plutella_xylostella_dbmfjv1x1_core_31_84_1
    CHISUP = chilo_suppressalis_csuogs1_core_31_84_1
    PAPGLA = papilio_glaucus_v1x1_core_31_84_1
    LERACC = lerema_accius_v1x1_core_31_84_1
    PAPPOL = [ Papilio_polytes 76194 ]
    PAPXUT = [ Papilio_xuthus 66420 ]
    MANSEX = manduca_sexta_msex1_core_31_84_1

For each taxon in the compara analysis, the [TAXA] stanza links the name used within the sequence/tree files to the associated core database.

Taxa that do not have a core database may be included in a compara analysis by providing a species name and NCBI taxonomy ID, e.g. PAPPOL = [ Papilio_polytes 76194 ]