{"metadata":{"image":[],"title":"","description":""},"api":{"url":"","auth":"required","results":{"codes":[]},"settings":"","params":[]},"next":{"description":"","pages":[]},"title":"[SCAFFOLD_NAMES]","type":"basic","slug":"scaffold_names-core","excerpt":"","body":"```\n[SCAFFOLD_NAMES]\n  HEADER = 1\n  SCAFFOLD = [ /(.+)/ /scaf_/scaffold/ ]\n  CONTIG = [ /(.+)/ /ctg_/contig/ ]\n```\n- To use a file as a source of scaffold name synonyms for ``import_sequence_synonyms.pl``, [[FILES]](doc:files-core) ``SCAFFOLD_NAMES`` must be set and the ``HEADER`` flag may be used to indicate that the file has a header row that should be skipped during import.\n- Alternatively [Match and replace](doc:match-and-replace) regular expressions may be defined for ``SCAFFOLD`` and/or ``CONTIG`` names to automatically generate a file of synonyms during sequence import.","updates":[],"order":14,"isReference":false,"hidden":false,"sync_unique":"","link_url":"","link_external":false,"_id":"58c10f5a2c3c720f00768bba","parentDoc":null,"project":"5735936aafab441700723a50","user":"573592b84b0ab120000b7d44","__v":0,"version":{"version":"2.0","version_clean":"2.0.0","codename":"","is_stable":true,"is_beta":false,"is_hidden":false,"is_deprecated":false,"categories":["58c10f5a2c3c720f00768b88","58c10f5a2c3c720f00768b89","58c10f5a2c3c720f00768b8a","58c10f5a2c3c720f00768b8b","58c10f5a2c3c720f00768b8c","58c10f5a2c3c720f00768b8d","58c10f5a2c3c720f00768b8e","58c10f5a2c3c720f00768b8f","58c10f5a2c3c720f00768b90","58c10f5a2c3c720f00768b91","58c10f5a2c3c720f00768b92","58c10f5a2c3c720f00768b93","58c11574b36d8c0f006fda47","58c2cdcafc6eed3900e97640","58c2ce8afc6eed3900e97663"],"_id":"58c10f5a2c3c720f00768b87","project":"5735936aafab441700723a50","releaseDate":"2017-03-09T08:16:26.385Z","createdAt":"2017-03-09T08:16:26.385Z","__v":4},"category":{"sync":{"isSync":false,"url":""},"pages":[],"title":"Configuration Options (Core Import)","slug":"configuration-options-core-import","order":12,"from_sync":false,"reference":false,"_id":"58c10f5a2c3c720f00768b91","version":"58c10f5a2c3c720f00768b87","project":"5735936aafab441700723a50","createdAt":"2016-05-13T14:34:01.858Z","__v":0},"createdAt":"2016-05-16T09:46:47.983Z","githubsync":""}
``` [SCAFFOLD_NAMES] HEADER = 1 SCAFFOLD = [ /(.+)/ /scaf_/scaffold/ ] CONTIG = [ /(.+)/ /ctg_/contig/ ] ``` - To use a file as a source of scaffold name synonyms for ``import_sequence_synonyms.pl``, [[FILES]](doc:files-core) ``SCAFFOLD_NAMES`` must be set and the ``HEADER`` flag may be used to indicate that the file has a header row that should be skipped during import. - Alternatively [Match and replace](doc:match-and-replace) regular expressions may be defined for ``SCAFFOLD`` and/or ``CONTIG`` names to automatically generate a file of synonyms during sequence import.