{"_id":"58c10f5a2c3c720f00768bba","parentDoc":null,"project":"5735936aafab441700723a50","user":"573592b84b0ab120000b7d44","__v":0,"version":{"_id":"58c10f5a2c3c720f00768b87","project":"5735936aafab441700723a50","__v":4,"createdAt":"2017-03-09T08:16:26.385Z","releaseDate":"2017-03-09T08:16:26.385Z","categories":["58c10f5a2c3c720f00768b88","58c10f5a2c3c720f00768b89","58c10f5a2c3c720f00768b8a","58c10f5a2c3c720f00768b8b","58c10f5a2c3c720f00768b8c","58c10f5a2c3c720f00768b8d","58c10f5a2c3c720f00768b8e","58c10f5a2c3c720f00768b8f","58c10f5a2c3c720f00768b90","58c10f5a2c3c720f00768b91","58c10f5a2c3c720f00768b92","58c10f5a2c3c720f00768b93","58c11574b36d8c0f006fda47","58c2cdcafc6eed3900e97640","58c2ce8afc6eed3900e97663"],"is_deprecated":false,"is_hidden":false,"is_beta":false,"is_stable":true,"codename":"","version_clean":"2.0.0","version":"2.0"},"category":{"_id":"58c10f5a2c3c720f00768b91","version":"58c10f5a2c3c720f00768b87","project":"5735936aafab441700723a50","__v":0,"sync":{"url":"","isSync":false},"reference":false,"createdAt":"2016-05-13T14:34:01.858Z","from_sync":false,"order":12,"slug":"configuration-options-core-import","title":"Configuration Options (Core Import)"},"githubsync":"","updates":[],"next":{"pages":[],"description":""},"createdAt":"2016-05-16T09:46:47.983Z","link_external":false,"link_url":"","sync_unique":"","hidden":false,"api":{"results":{"codes":[]},"settings":"","auth":"required","params":[],"url":""},"isReference":false,"order":14,"body":"```\n[SCAFFOLD_NAMES]\n  HEADER = 1\n  SCAFFOLD = [ /(.+)/ /scaf_/scaffold/ ]\n  CONTIG = [ /(.+)/ /ctg_/contig/ ]\n```\n- To use a file as a source of scaffold name synonyms for ``import_sequence_synonyms.pl``, [[FILES]](doc:files-core) ``SCAFFOLD_NAMES`` must be set and the ``HEADER`` flag may be used to indicate that the file has a header row that should be skipped during import.\n- Alternatively [Match and replace](doc:match-and-replace) regular expressions may be defined for ``SCAFFOLD`` and/or ``CONTIG`` names to automatically generate a file of synonyms during sequence import.","excerpt":"","slug":"scaffold_names-core","type":"basic","title":"[SCAFFOLD_NAMES]"}
``` [SCAFFOLD_NAMES] HEADER = 1 SCAFFOLD = [ /(.+)/ /scaf_/scaffold/ ] CONTIG = [ /(.+)/ /ctg_/contig/ ] ``` - To use a file as a source of scaffold name synonyms for ``import_sequence_synonyms.pl``, [[FILES]](doc:files-core) ``SCAFFOLD_NAMES`` must be set and the ``HEADER`` flag may be used to indicate that the file has a header row that should be skipped during import. - Alternatively [Match and replace](doc:match-and-replace) regular expressions may be defined for ``SCAFFOLD`` and/or ``CONTIG`` names to automatically generate a file of synonyms during sequence import.