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Description

Files

database.ini
setup.ini
default.ini
operophtera_brumata_core_32_85_1.ini

Importing data

Requirements
Running the EasyImport container
`-s` Create database and load sequence data
`-p` Prepare the gff file for import
`-g` Import gff from prepared file
`-v` Verify import
`-b -r -c` Import additional annotations
`-e -j -f` Export files
`-i` Generate search index
`-u` Update meta table

Additional documentation

Match and replace
Processing exceptions
Referencing gff attributes
Repairing gff

Configuration Options (Hosting)

[DATABASE]
[ENSEMBL_USER]
[REPOSITORIES]
[WEBSITE]
[DATA_SOURCE]

Configuration Options (Database)

[DATA_SOURCE]
[DATABASE]
[WEBSITE]

Configuration Options (Core Import)

[DATABASE_CORE]
[DATABASE_SEARCH]
[DATABASE_TAXONOMY]
[DATABASE_TEMPLATE]
[DBXREFS]
[ENSEMBL]
[EXTERNAL_DBS]
[FILES]
[_DESCRIPTIONS]
[_NAMES]
[_STABLE_IDS]
[GFF]
[META]
[MODIFY]
[SCAFFOLD_NAMES]
[XREF]

Configuration Options (Compara Import)

[DATABASE_CORE]
[DATABASE_COMPARA]
[DATABASE_TEMPLATE]
[ENSEMBL]
[METHOD_LINK]
[SPECIES_SET]
[TAXA]
[ORTHOGROUP]

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[EXTERNAL_DBS]

[EXTERNAL_DBS]

Used to add any additional external databases to the external_db table in the Ensembl database if required to support [DBXREFS]

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