[ORTHOGROUP] PREFIX = OG PROTEIN = .faa PROTEIN_ALIGN = [ .faa.mafft Mafft ] BLASTP = .blastp FNAFILE = .fna BOUNDEDFILE = .fba TREE = .treefix.tree.DN.branlen
Contains The prefix and file-type suffices for each of the files used in the compara analysis. For each orthogroup, there should be a single folder containing one file of each type for loading into the compara database.
The alignment method used for aligned protein files should also be specified (e.g.
PROTEIN_ALIGN = [ .faa.mafft Mafft ].
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