{"_id":"58c10f5a2c3c720f00768ba4","__v":0,"parentDoc":null,"project":"5735936aafab441700723a50","category":{"_id":"58c10f5a2c3c720f00768b8a","version":"58c10f5a2c3c720f00768b87","__v":0,"project":"5735936aafab441700723a50","sync":{"url":"","isSync":false},"reference":false,"createdAt":"2016-05-13T09:49:29.176Z","from_sync":false,"order":4,"slug":"quick-start","title":"Importing data"},"githubsync":"","user":"573592b84b0ab120000b7d44","version":{"_id":"58c10f5a2c3c720f00768b87","project":"5735936aafab441700723a50","__v":4,"createdAt":"2017-03-09T08:16:26.385Z","releaseDate":"2017-03-09T08:16:26.385Z","categories":["58c10f5a2c3c720f00768b88","58c10f5a2c3c720f00768b89","58c10f5a2c3c720f00768b8a","58c10f5a2c3c720f00768b8b","58c10f5a2c3c720f00768b8c","58c10f5a2c3c720f00768b8d","58c10f5a2c3c720f00768b8e","58c10f5a2c3c720f00768b8f","58c10f5a2c3c720f00768b90","58c10f5a2c3c720f00768b91","58c10f5a2c3c720f00768b92","58c10f5a2c3c720f00768b93","58c11574b36d8c0f006fda47","58c2cdcafc6eed3900e97640","58c2ce8afc6eed3900e97663"],"is_deprecated":false,"is_hidden":false,"is_beta":false,"is_stable":true,"codename":"","version_clean":"2.0.0","version":"2.0"},"updates":[],"next":{"pages":[],"description":""},"createdAt":"2016-05-13T11:10:44.345Z","link_external":false,"link_url":"","sync_unique":"","hidden":false,"api":{"results":{"codes":[]},"settings":"","auth":"required","params":[],"url":""},"isReference":false,"order":5,"body":"If a provider ``PROTEIN`` file is available for reference and the corresponding protein-coding gene models have been imported in [`-g` Import gff from prepared file](doc:step-24-import-gff-from-prepared-file), ``verify_translations.pl`` runs checks to see if the sequences in the provider file and database match.\n[block:code]\n{\n  \"codes\": [\n    {\n      \"code\": \"docker run --rm \\\\\\n           --name easy-import-operophtera_brumata_v1_core_32_85_1 \\\\\\n           --link genomehubs-mysql \\\\\\n           -v ~/demo/genomehubs-import/import/conf:/import/conf \\\\\\n           -v ~/demo/genomehubs-import/import/data:/import/data \\\\\\n           -e DATABASE=operophtera_brumata_v1_core_32_85_1 \\\\\\n           -e FLAGS=\\\"-v\\\" \\\\\\n           genomehubs/easy-import:latest\",\n      \"language\": \"text\",\n      \"name\": \"run verify_translations.pl\"\n    }\n  ]\n}\n[/block]","excerpt":"(optional)","slug":"step-25-verify-import","type":"basic","title":"`-v` Verify import"}

`-v` Verify import

(optional)

If a provider ``PROTEIN`` file is available for reference and the corresponding protein-coding gene models have been imported in [`-g` Import gff from prepared file](doc:step-24-import-gff-from-prepared-file), ``verify_translations.pl`` runs checks to see if the sequences in the provider file and database match. [block:code] { "codes": [ { "code": "docker run --rm \\\n --name easy-import-operophtera_brumata_v1_core_32_85_1 \\\n --link genomehubs-mysql \\\n -v ~/demo/genomehubs-import/import/conf:/import/conf \\\n -v ~/demo/genomehubs-import/import/data:/import/data \\\n -e DATABASE=operophtera_brumata_v1_core_32_85_1 \\\n -e FLAGS=\"-v\" \\\n genomehubs/easy-import:latest", "language": "text", "name": "run verify_translations.pl" } ] } [/block]