Quick start guide

Getting started with easy-import

GenomeHubs

easy-import has been incorporated as a core component of GenomeHubs[1], which provide a Dockerised solution to setting up a custom Ensembl genome browser with a SequenceServer BLAST server and h5ai downloads server.

A guide to running easy-import (in an EasyImport Docker container) as part of a complete GenomeHubs setup is available at genomehubs.gitbooks.io and is the recommended place for new users to start. The pages on this site provide a more complete description of the available configuration options for the easy-import scripts.

[1] Challis RJ, Kumar S, Stevens L & Blaxter M (2017) GenomeHubs: Simple containerised setup of a custom Ensembl database and web server for any species. Database, 2017:bax039
doi:10.1093/database/bax039

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Very quick start...

If you just want to run some code to see what GenomeHubs and easy-import can do, install docker then:

cd
git clone https://github.com/genomehubs/demo
demo/import.sh
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ensembl.lepbase.org - an Ensembl for the Lepidoptera created using GenomeHubs and easy-import